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 *  Copyright (c) by Allin Cottrell
 *   This program is free software; you can redistribute it and/or modify
 *   it under the terms of the GNU General Public License as published by
 *   the Free Software Foundation; either version 2 of the License, or
 *   (at your option) any later version.
 *   This program is distributed in the hope that it will be useful,
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of
 *   GNU General Public License for more details.
 *   You should have received a copy of the GNU General Public License
 *   along with this program; if not, write to the Free Software
 *   Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA.


/* #define LDEBUG 1 */

/* minimum value of diagonal element of R (as in X = QR) that counts
   as non-zero for the purpose of determining the rank of X */

#define R_DIAG_MIN 1.0e-8

typedef enum {
} GretlMatrixError;

typedef enum {
} GretlMatrixMod;

typedef struct _gretl_matrix gretl_matrix;
typedef struct _gretl_matrix gretl_vector;

struct _gretl_matrix {
    int rows;
    int cols;
    int t;
    double *val;

#define mdx(a,i,j)   ((j)*(a)->rows+(i))
#define mdxtr(a,i,j) ((i)*(a)->rows+(j))

 * gretl_matrix_cols:
 * @m: matrix to query.
 * Gives the number of columns in @m. 

#define gretl_matrix_cols(m) ((m == NULL)? 0 : m->cols)

 * gretl_matrix_rows:
 * @m: matrix to query.
 * Gives the number of rows in @m. 

#define gretl_matrix_rows(m) ((m == NULL)? 0 : m->rows)

 * gretl_vector_get_length:
 * @v: vector to examine.
 * Gives the length of vector @v (without regard to whether
 * it is a row or column vector).

#define gretl_vector_get_length(v) ((v == NULL)? 0 : \
                                    (v->cols > v->rows)? v->cols : \

 * gretl_vector_alloc:
 * @i: number of columns.
 * Allocates a new #gretl_vector with @i columns.

#define gretl_vector_alloc(i) gretl_matrix_alloc(1,(i))

 * gretl_column_vector_alloc:
 * @i: number of rows.
 * Allocates a new column gretl_vector with @i rows.

#define gretl_column_vector_alloc(i) gretl_matrix_alloc((i),1)

 * gretl_vector_free:
 * @v: %gretl_vector to free.
 * Frees the vector @v and its associated storage.

#define gretl_vector_free(v) gretl_matrix_free(v)

double gretl_matrix_get (const gretl_matrix *m, int i, int j);

double gretl_vector_get (const gretl_vector *v, int i);

int gretl_matrix_set (gretl_matrix *m, int i, int j, double x);

int gretl_vector_set (gretl_vector *v, int i, double x);

gretl_matrix *gretl_matrix_alloc (int rows, int cols);

gretl_matrix *gretl_matrix_reuse (gretl_matrix *m, int rows, int cols);

gretl_matrix *gretl_packed_matrix_alloc (int rows);

gretl_matrix *gretl_identity_matrix_new (int n);

gretl_matrix *gretl_matrix_copy (const gretl_matrix *m);

gretl_matrix *gretl_matrix_copy_transpose (const gretl_matrix *m);

gretl_vector *gretl_column_vector_from_array (const double *x, 
                                    int n, GretlMatrixMod mod);

gretl_vector *gretl_data_series_to_vector (const double **Z, int varno, 
                                 int t1, int t2);

gretl_matrix *gretl_matrix_from_2d_array (const double **X, 
                                int rows, int cols);

void gretl_matrix_log (gretl_matrix *m);

double gretl_vector_mean (const gretl_vector *v);

double gretl_vector_variance (const gretl_vector *v);

void gretl_matrix_zero (gretl_matrix *m);

int gretl_matrix_zero_upper (gretl_matrix *m);

int gretl_matrix_zero_lower (gretl_matrix *m);

void gretl_matrix_multiply_by_scalar (gretl_matrix *m, double x);

void gretl_matrix_divide_by_scalar (gretl_matrix *m, double x);

void gretl_matrix_dot_pow (gretl_matrix *m, double x);

void gretl_matrix_free (gretl_matrix *m);

double *gretl_matrix_steal_data (gretl_matrix *m);

int gretl_matrix_copy_values (gretl_matrix *targ, 
                        const gretl_matrix *src);

int gretl_matrix_add_to (gretl_matrix *targ, const gretl_matrix *src);

gretl_matrix_subtract_from (gretl_matrix *targ, const gretl_matrix *src);

int gretl_matrix_transpose (gretl_matrix *targ, const gretl_matrix *src);

int gretl_square_matrix_transpose (gretl_matrix *m);

int gretl_matrix_add_self_transpose (gretl_matrix *m);

int gretl_matrix_multiply_mod (const gretl_matrix *a, GretlMatrixMod amod,
                         const gretl_matrix *b, GretlMatrixMod bmod,
                         gretl_matrix *c);

int gretl_matrix_multiply (const gretl_matrix *a, const gretl_matrix *b,
                     gretl_matrix *c);

gretl_matrix *
gretl_matrix_kronecker_product (const gretl_matrix *A, const gretl_matrix *B);

double gretl_matrix_dot_product (const gretl_matrix *a, GretlMatrixMod amod,
                         const gretl_matrix *b, GretlMatrixMod bmod,
                         int *errp);

double gretl_vector_dot_product (const gretl_vector *a, const gretl_vector *b,
                         int *errp);

gretl_matrix *gretl_matrix_dot_multiply (const gretl_matrix *a, 
                               const gretl_matrix *b);

double gretl_matrix_row_mean (const gretl_matrix *m, int row);

double gretl_matrix_column_mean (const gretl_matrix *m, int col);

void gretl_matrix_demean_by_row (gretl_matrix *m);

void gretl_matrix_demean_by_column (gretl_matrix *m);

gretl_matrix *gretl_matrix_vcv (gretl_matrix *m);

double gretl_matrix_determinant (gretl_matrix *a);

double gretl_matrix_log_determinant (gretl_matrix *a);

double gretl_matrix_log_abs_determinant (gretl_matrix *a);

double gretl_vcv_log_determinant (const gretl_matrix *m);

int gretl_LU_solve (gretl_matrix *a, gretl_vector *b);

int gretl_invert_general_matrix (gretl_matrix *a);

int gretl_invert_symmetric_matrix (gretl_matrix *a);

int gretl_invert_diagonal_matrix (gretl_matrix *a);

int gretl_SVD_invert_matrix (gretl_matrix *a);

double gretl_symmetric_matrix_rcond (const gretl_matrix *m);

int gretl_eigen_sort (double *evals, gretl_matrix *evecs, int rank);

double *gretl_general_matrix_eigenvals (gretl_matrix *m, gretl_matrix *ev);

double *gretl_symmetric_matrix_eigenvals (gretl_matrix *m,
                                int eigenvecs);

gretl_matrix *gretl_matrix_right_nullspace (const gretl_matrix *M);

int gretl_matrix_cholesky_decomp (gretl_matrix *a);

int gretl_matrix_QR_decomp (gretl_matrix *M, gretl_matrix *R);

int gretl_matrix_QR_rank (gretl_matrix *R, char **pmask, int *errp);

int gretl_matrix_ols (const gretl_vector *y, const gretl_matrix *X,
                  gretl_vector *b, gretl_matrix *vcv,
                  gretl_vector *uhat, double *s2);

gretl_matrix_restricted_ols (const gretl_vector *y, const gretl_matrix *X,
                       const gretl_matrix *R, const gretl_vector *q,
                       gretl_vector *b, gretl_matrix *vcv,
                       double *s2);

int gretl_matrix_svd_ols (const gretl_vector *y, const gretl_matrix *X,
                    gretl_vector *b, gretl_matrix *vcv,
                    gretl_vector *uhat, double *s2);

double gretl_scalar_b_X_b (const gretl_vector *b, GretlMatrixMod bmod,
                     const gretl_matrix *X, int *errp);

gretl_matrix *
gretl_matrix_A_X_A (const gretl_matrix *A, GretlMatrixMod amod,
                const gretl_matrix *X, int *errp);

gretl_matrix_diagonal_sandwich (const gretl_vector *d, const gretl_matrix *X,
                        gretl_matrix *DXD);

gretl_matrix *
gretl_vcv_matrix_from_model (MODEL *pmod, const char *select);

gretl_vector *
gretl_coeff_vector_from_model (const MODEL *pmod, const char *select);

gretl_matrix_print_to_prn (const gretl_matrix *m, const char *msg, PRN *prn);

void gretl_matrix_print (const gretl_matrix *m, const char *msg);

void gretl_matrix_set_int (gretl_matrix *m, int t);

int gretl_matrix_get_int (const gretl_matrix *m);

int gretl_is_identity_matrix (const gretl_matrix *m);

int gretl_is_zero_vector (const gretl_vector *v);

gretl_matrix *
gretl_covariance_matrix_from_varlist (const int *list, const double **Z, 
                              const DATAINFO *pdinfo, 
                              gretl_matrix **means, int *errp);

int gretl_matrix_row_to_array (const gretl_matrix *m, int i, double *x);

gretl_matrix **gretl_matrix_array_alloc (int n);

gretl_matrix **
gretl_matrix_array_alloc_with_size (int n, int rows, int cols);

void gretl_matrix_array_free (gretl_matrix **A, int n);

gretl_matrix *gretl_matrix_data_subset (const int *list, const double **Z,
                              int t1, int t2, char **pmask);

#endif /* GRETL_MATRIX_H */

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